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Publications

This list includes publications for which the GenoToul Bioinformatics facility has been used (hardware infrastructure, Funding, or Staff members). All Sigenae's publications have used the GenoToul Bioinformatics hardware infrastructure.

2006 and before

1. Salanoubat, M., Genin, S., Artiguenave, F., Gouzy, J., Mangenot, S., Arlat, M., Billault, A., Brottier, P., Camus, J.C., Cattolico, L., Chandler, M., Choisne, N., Claudel-Renard, C., Cunnac, S., Demange, N., Gaspin, C., Lavie, M., Moisan, A., Robert, C., Saurin, W., Schiex, T., Siguier, P., Thébault, P., Whalen, M., Wincker, P., Levy, M., Weissenbach, J., and Boucher, C.A. (2002). Genome sequence of the plant pathogen Ralstonia solanacearum. Nature 415, 497–502. https://doi.org/10.1038/415497a.

2. Claudel‐Renard, C., Chevalet, C., Faraut, T., and Kahn, D. (2003). Enzyme‐specific profiles for genome annotation: PRIAM. Nucleic Acids Research 31, 6633–6639. https://doi.org/10.1093/nar/gkg847.

3. Gouet, P., and Courcelle, E. (2002). ENDscript: A workflow to display sequence and structure information. Bioinformatics 18, 767–768. https://doi.org/10.1093/bioinformatics/18.5.767.

4. Gouet, P., Robert, X., and Courcelle, E. (2003). ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins. Nucleic Acids Research 31, 3320–3323. https://doi.org/10.1093/nar/gkg556.

5. Schiex, T., Gouzy, J., Moisan, A., and Oliveira, Y. de (2003). FrameD: A flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences. Nucleic Acids Research 31, 3738–3741. https://doi.org/10.1093/nar/gkg610.

6. Foissac, S., Bardou, P., Moisan, A., Cros, M.-J., and Schiex, T. (2003). EUGÈNE’HOM: A generic similarity-based gene finder using multiple homologous sequences. Nucleic Acids Research 31, 3742–3745. https://doi.org/10.1093/nar/gkg586.

7. Muller, C., Denis, M., Gentzbittel, L., and Faraut, T. (2004). The Iccare web server: An attempt to merge sequence and mapping information for plant and animal species. Nucleic Acids Research 32, W429–W434. https://doi.org/10.1093/nar/gkh460.

8. Gourraud, P.-A., Lamiraux, P., El-Kadhi, N., Raffoux, C., and Cambon-Thomsen, A. (2005). Inferred HLA Haplotype Information for Donors From Hematopoietic Stem Cells Donor Registries. Human Immunology 66, 563–570. https://doi.org/10.1016/j.humimm.2005.01.011.

9. Carrere, S., and Gouzy, J. (2006). REMORA: A pilot in the ocean of BioMoby web-services. Bioinformatics 22, 900–901. https://doi.org/10.1093/bioinformatics/btl001.

10. Thébault, P., Givry, S. de, Schiex, T., and Gaspin, C. (2006). Searching RNA motifs and their intermolecular contacts with constraint networks. Bioinformatics 22, 2074–2080. https://doi.org/10.1093/bioinformatics/btl354.