Tutorials

Software

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  Conda – How to use conda on the cluster?

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  R – How to use R on the cluster?

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  VSCode – How to use VSCode on the cluster?

Workflows

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  Nextflow – How to use Nextflow on the cluster?

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  Snakemake – How to use Snakemake on the cluster?

Open On Demand (OOD)

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  Rstudio (OOD) – How to use Rstudio with Open On Demand?

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  Jupyter Notebook (OOD) – How to use Jupyter Notebook with Open On Demand?

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  Linux Desktop (OOD) – How to use Linux Desktop (VM) with Open On Demand?

Video clips

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  Cluster – How to use the cluster?

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  Conda – How to use conda on the cluster?

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  Nextflow – How to use Nextflow on the cluster?

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  Open On Demand (OOD) – How to use Open On Demand?

Our training resources

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  Linux initiation – How to use command line under Linux?

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  Cluster – How to use Genotoul-bioinfo cluster?

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  Sed & Awk on large files – How to processing large files using sed and awk?

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  Awk programming – How to use awk to analyze tabular like files?

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  Nextflow – How to use workflows with Nextflow?

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  Python for Biology – How can you use python to analyze biological data?

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  RNASeq - bioinfo – How to prepare and clean sequence data in a context of RNASeq analysis?

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  RNASeq - biostat – How to explore and realize a correct statistical analysis of RNASeq data?

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  Shotgun metagenomic – How to analysis shotgun metagenomic data?

Sigenae's training resources

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  Perl One-liner – How to manipulate file data with one line of perl commands?

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  Short-read alignment & small size variants calling – How to do a small size variant calling analysis using short reads?