Tutorials¶
Softwares¶
Open On Demand (OOD)¶
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Rstudio (OOD) – How to use Rstudio with Open On Demand?
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Jupyter Notebook (OOD) – How to use Jupyter Notebook with Open On Demand?
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Linux Desktop (OOD) – How to use Linux Desktop (VM) with Open On Demand?
Video clips¶
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Cluster – How to use the cluster?
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Conda – How to use conda on the cluster?
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Open On Demand (OOD) – How to use Open On Demand?
Our training resources¶
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Linux initiation – How to use command line under Linux?
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Cluster – How to use Genotoul-bioinfo cluster?
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Sed & Awk on large files – How to processing large files using
sedandawk? -
Awk programming – How to use
awkto analyze tabular like files? -
Nextflow – How to use and create workflows with Nextflow?
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Python for Biology – How can you use
pythonto analyze biological data? -
RNASeq - bioinfo – How to prepare and clean sequence data in a context of RNASeq analysis?
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RNASeq - biostat – How to explore and realize a correct statistical analysis of RNASeq data?
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Shotgun metagenomic – How to analysis shotgun metagenomic data?
Sigenae's training resources¶
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Perl One-liner – How to manipulate file data with one line of
perlcommands? -
Short-read alignment & small size variants calling – How to do a small size variant calling analysis using short reads?












