Publications¶
This list includes publications for which the GenoToul Bioinformatics facility has been used (hardware infrastructure, Funding, or Staff members). All Sigenae's publications have used the GenoToul Bioinformatics hardware infrastructure.
2021¶
1. Labussière, E., Achard, C., Dubois, S., Combes, S., Castex, M., and Renaudeau, D. (2022). Saccharomyces cerevisiae boulardii CNCM I-1079 supplementation in finishing male pigs helps to cope with heat stress through feeding behaviour and gut microbiota modulation. British Journal of Nutrition 127, 353–368. https://doi.org/10.1017/S0007114521001756.
2. Kuhl, H., Guiguen, Y., Höhne, C., Kreuz, E., Du, K., Klopp, C., Lopez-Roques, C., Yebra-Pimentel, E.S., Ciorpac, M., Gessner, J., Holostenco, D., Kleiner, W., Kohlmann, K., Lamatsch, D.K., Prokopov, D., Bestin, A., Bonpunt, E., Debeuf, B., Haffray, P., Morvezen, R., Patrice, P., Suciu, R., Dirks, R., Wuertz, S., Kloas, W., Schartl, M., and Stöck, M. (2021). A 180 Myr-old female-specific genome region in sturgeon reveals the oldest known vertebrate sex determining system with undifferentiated sex chromosomes. Philosophical Transactions of the Royal Society B: Biological Sciences 376, 20200089. https://doi.org/10.1098/rstb.2020.0089.
3. Adolfi, M.C., Du, K., Kneitz, S., Cabau, C., Zahm, M., Klopp, C., Feron, R., Paixão, R.V., Varela, E.S., De Almeida, F.L., De Oliveira, M.A., Nóbrega, R.H., Lopez-Roques, C., Iampietro, C., Lluch, J., Kloas, W., Wuertz, S., Schaefer, F., Stöck, M., Guiguen, Y., and Schartl, M. (2021). A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas). Scientific Reports 11, 21544. https://doi.org/10.1038/s41598-021-01066-z.
4. Urvois, T., Perrier, C., Roques, A., Sauné, L., Courtin, C., Li, Y., Johnson, A.J., Hulcr, J., Auger-Rozenberg, M.-A., and Kerdelhué, C. (2022). A first inference of the phylogeography of the worldwide invader Xylosandrus compactus. Journal of Pest Science 95, 1217–1231. https://doi.org/10.1007/s10340-021-01443-7.
5. Boyrie, L., Moreau, C., Frugier, F., Jacquet, C., and Bonhomme, M. (2021). A linkage disequilibrium-based statistical test for Genome-Wide Epistatic Selection Scans in structured populations. Heredity 126, 77–91. https://doi.org/10.1038/s41437-020-0349-1.
6. Beaumont, M., Lencina, C., Painteaux, L., Viémon-Desplanque, J., Phornlaphat, O., Lambert, W., and Chalvon-Demersay, T. (2022). A mix of functional amino acids and grape polyphenols promotes the growth of piglets, modulates the gut microbiota in vivo and regulates epithelial homeostasis in intestinal organoids. Amino Acids 54, 1357–1369. https://doi.org/10.1007/s00726-021-03082-9.
7. Tardy, V., Bonnineau, C., Bouchez, A., Miège, C., Masson, M., Jeannin, P., and Pesce, S. (2021). A pilot experiment to assess the efficiency of pharmaceutical plant wastewater treatment and the decreasing effluent toxicity to periphytic biofilms. Journal of Hazardous Materials 411, 125121. https://doi.org/10.1016/j.jhazmat.2021.125121.
8. Imarazene, B., Du, K., Beille, S., Jouanno, E., Feron, R., Pan, Q., Torres-Paz, J., Lopez-Roques, C., Castinel, A., Gil, L., Kuchly, C., Donnadieu, C., Parrinello, H., Journot, L., Cabau, C., Zahm, M., Klopp, C., Pavlica, T., Al-Rikabi, A., Liehr, T., Simanovsky, S.A., Bohlen, J., Sember, A., Perez, J., Veyrunes, F., Mueller, T.D., Postlethwait, J.H., Schartl, M., Herpin, A., Rétaux, S., and Guiguen, Y. (2021). A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus. Current Biology 31, 4800–4809.e9. https://doi.org/10.1016/j.cub.2021.08.030.
9. Barr, C.B., Cerdan, A., Clavier, S., and Murienne, J. (2021). Amazonopsis cerdani (Coleoptera: Elmidae: Elminae), a New Species of Riffle Beetle from French Guiana with Habitat Observations. The Coleopterists Bulletin 75. https://doi.org/10.1649/0010-065X-75.2.427.
10. Radhakrishnan, G.V., Keller, J., Rich, M.K., Vernié, T., Mbadinga Mbadinga, D.L., Vigneron, N., Cottret, L., Clemente, H.S., Libourel, C., Cheema, J., Linde, A.-M., Eklund, D.M., Cheng, S., Wong, G.K.S., Lagercrantz, U., Li, F.-W., Oldroyd, G.E.D., and Delaux, P.-M. (2020). An ancestral signalling pathway is conserved in intracellular symbioses-forming plant lineages. Nature Plants 6, 280–289. https://doi.org/10.1038/s41477-020-0613-7.
11. Descoeudres, N., Jouneau, L., Henry, C., Gorrichon, K., Derré-Bobillot, A., Serror, P., Gillespie, L.L., Archambaud, C., Pagliuso, A., and Bierne, H. (2021). An Immunomodulatory Transcriptional Signature Associated With Persistent Listeria Infection in Hepatocytes. Frontiers in Cellular and Infection Microbiology 11, 761945. https://doi.org/10.3389/fcimb.2021.761945.
12. Dellière, S., Dannaoui, E., Fieux, M., Bonfils, P., Gricourt, G., Demontant, V., Podglajen, I., Woerther, P.-L., Angebault, C., and Botterel, F. (2021). Analysis of Microbiota and Mycobiota in Fungal Ball Rhinosinusitis: Specific Interaction between Aspergillus fumigatus and Haemophilus influenza? Journal of Fungi 7, 550. https://doi.org/10.3390/jof7070550.
13. Marie-Etancelin, C., Tortereau, F., Gabinaud, B., Martinez Boggio, G., Le Graverand, Q., Marcon, D., De Almeida, M.-L., Pascal, G., Weisbecker, J.-L., and Meynadier, A. (2021). Apart From the Diet, the Ruminal Microbiota of Lambs Is Modified in Relation to Their Genetic Potential for Feed Efficiency or Feeding Behavior. Frontiers in Microbiology 12, 759432. https://doi.org/10.3389/fmicb.2021.759432.
14. Blanc, N., Frank, X., Radjai, F., Mayer-Laigle, C., and Delenne, J.-Y. (2021). Breakage of flawed particles by peridynamic simulations. Computational Particle Mechanics 8, 1019–1031. https://doi.org/10.1007/s40571-021-00390-5.
15. Cordaux, R., Chebbi, M.A., Giraud, I., Pleydell, D.R.J., and Peccoud, J. (2021). Characterization of a Sex-Determining Region and Its Genomic Context via Statistical Estimates of Haplotype Frequencies in Daughters and Sons Sequenced in Pools. Genome Biology and Evolution 13, evab121. https://doi.org/10.1093/gbe/evab121.
16. Lesturgie, P., Planes, S., and Mona, S. (2021). Coalescence times, life history traits and conservation concerns: An example from four coastal shark species from the Indo-Pacific. https://doi.org/10.22541/au.161963333.37636342/v2.
17. Thomy, J., Sanchez, F., Gut, M., Cruz, F., Alioto, T., Piganeau, G., Grimsley, N., and Yau, S. (2021). Combining Nanopore and Illumina Sequencing Permits Detailed Analysis of Insertion Mutations and Structural Variations Produced by PEG-Mediated Transformation in Ostreococcus tauri. Cells 10, 664. https://doi.org/10.3390/cells10030664.
18. Policarpo, M., Fumey, J., Lafargeas, P., Naquin, D., Thermes, C., Naville, M., Dechaud, C., Volff, J.-N., Cabau, C., Klopp, C., Møller, P.R., Bernatchez, L., García-Machado, E., Rétaux, S., and Casane, D. (2021). Contrasting Gene Decay in Subterranean Vertebrates: Insights from Cavefishes and Fossorial Mammals. Molecular Biology and Evolution 38, 589–605. https://doi.org/10.1093/molbev/msaa249.
19. Hamard, S., Céréghino, R., Barret, M., Sytiuk, A., Lara, E., Dorrepaal, E., Kardol, P., Küttim, M., Lamentowicz, M., Leflaive, J., Le Roux, G., Tuittila, E., and Jassey, V.E.J. (2021). Contribution of microbial photosynthesis to peatland carbon uptake along a latitudinal gradient. Journal of Ecology 109, 3424–3441. https://doi.org/10.1111/1365-2745.13732.
20. Robic, A., Faraut, T., Feve, K., Djebali, S., Prunier, A., Larzul, C., and Liaubet, L. (2021). Correlation Networks Provide New Insights into the Architecture of Testicular Steroid Pathways in Pigs. Genes 12, 551. https://doi.org/10.3390/genes12040551.
21. Poelstra, J.W., Salmona, J., Tiley, G.P., Schüßler, D., Blanco, M.B., Andriambeloson, J.B., Bouchez, O., Campbell, C.R., Etter, P.D., Hohenlohe, P.A., Hunnicutt, K.E., Iribar, A., Johnson, E.A., Kappeler, P.M., Larsen, P.A., Manzi, S., Ralison, J.M., Randrianambinina, B., Rasoloarison, R.M., Rasolofoson, D.W., Stahlke, A.R., Weisrock, D.W., Williams, R.C., Chikhi, L., Louis, E.E., Radespiel, U., and Yoder, A.D. (2021). Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent. Systematic Biology 70, 203–218. https://doi.org/10.1093/sysbio/syaa053.
22. Sanchez, T., Cury, J., Charpiat, G., and Jay, F. (2021). Deep learning for population size history inference: Design, comparison and combination with approximate Bayesian computation. Molecular Ecology Resources 21, 2645–2660. https://doi.org/10.1111/1755-0998.13224.
23. Garcia-Baccino, C.A., Marie-Etancelin, C., Tortereau, F., Marcon, D., Weisbecker, J.-L., and Legarra, A. (2021). Detection of unrecorded environmental challenges in high-frequency recorded traits, and genetic determinism of resilience to challenge, with an application on feed intake in lambs. Genetics Selection Evolution 53, 4. https://doi.org/10.1186/s12711-020-00595-x.
24. Tani, R., Kawamura, W., Morita, T., Klopp, C., Milhes, M., Guiguen, Y., Yoshizaki, G., and Yazawa, R. (2021). Development of a polymerase chain reaction (PCR)-based genetic sex identification method in the chub mackerel Scomber japonicus and blue mackerel S. australasicus. Fisheries Science 87, 785–793. https://doi.org/10.1007/s12562-021-01548-z.
25. Bonhomme, M., Bensmihen, S., André, O., Amblard, E., Garcia, M., Maillet, F., Puech-Pagès, V., Gough, C., Fort, S., Cottaz, S., Bécard, G., and Jacquet, C. (2021). Distinct genetic basis for root responses to lipo-chitooligosaccharide signal molecules from different microbial origins. Journal of Experimental Botany 72, 3821–3834. https://doi.org/10.1093/jxb/erab096.
26. Hardy, A., Matelot, M., Touzeau, A., Klopp, C., Lopez-Roques, C., Duharcourt, S., and Defrance, M. (2021). DNAModAnnot: A R toolbox for DNA modification filtering and annotation. Bioinformatics 37, 2738–2740. https://doi.org/10.1093/bioinformatics/btab032.
27. Meynadier, A., Pascal, G., Kaleem, M., Farizon, Y., Cauquil, L., Combes, S., Durand, D., and Enjalbert, F. (2021). Do Digestive Bacteria Suffer from Oxidative Stress: A Study on Ruminal Bacteria. https://doi.org/10.21203/rs.3.rs-960221/v1.
28. Hassel, C., Gausserès, B., Guzylack-Piriou, L., and Foucras, G. (2021). Ductal Macrophages Predominate in the Immune Landscape of the Lactating Mammary Gland. Frontiers in Immunology 12, 754661. https://doi.org/10.3389/fimmu.2021.754661.
29. Grosser, A., Grobelak, A., Rorat, A., Courtois, P., Vandenbulcke, F., Lemière, S., Guyoneaud, R., Attard, E., and Celary, P. (2021). Effects of silver nanoparticles on performance of anaerobic digestion of sewage sludge and associated microbial communities. Renewable Energy 171, 1014–1025. https://doi.org/10.1016/j.renene.2021.02.127.
30. Luz, B.S.R.D., Nicolas, A., Chabelskaya, S., Rodovalho, V.D.R., Le Loir, Y., Azevedo, V.A.D.C., Felden, B., and Guédon, E. (2021). Environmental Plasticity of the RNA Content of Staphylococcus aureus Extracellular Vesicles. Frontiers in Microbiology 12, 634226. https://doi.org/10.3389/fmicb.2021.634226.
31. Leal, B.S.S., Chaves, C.J.N., Graciano, V.A., Boury, C., Huacre, L.A.P., Heuertz, M., and Palma-Silva, C. (2021). Evidence of local adaptation despite strong drift in a Neotropical patchily distributed bromeliad. Heredity 127, 203–218. https://doi.org/10.1038/s41437-021-00442-9.
32. Cruaud, A., Lehrter, V., Genson, G., Rasplus, J.-Y., and Depaquit, J. (2021). Evolution, systematics and historical biogeography of sand flies of the subgenus Paraphlebotomus (Diptera, Psychodidae, Phlebotomus) inferred using restriction-site associated DNA markers. PLOS Neglected Tropical Diseases 15, e0009479. https://doi.org/10.1371/journal.pntd.0009479.
33. Benites, L.F., Bucchini, F., Sanchez-Brosseau, S., Grimsley, N., Vandepoele, K., and Piganeau, G. (2021). Evolutionary Genomics of Sex-Related Chromosomes at the Base of the Green Lineage. Genome Biology and Evolution 13, evab216. https://doi.org/10.1093/gbe/evab216.
34. Rasplus, J., Rodriguez, L.J., Sauné, L., Peng, Y., Bain, A., Kjellberg, F., Harrison, R.D., Pereira, R.A.S., Ubaidillah, R., Tollon‐Cordet, C., Gautier, M., Rossi, J., and Cruaud, A. (2021). Exploring systematic biases, rooting methods and morphological evidence to unravel the evolutionary history of the genus ficus (Moraceae). Cladistics 37, 402–422. https://doi.org/10.1111/cla.12443.
35. Piles, M., Bergsma, R., Gianola, D., Gilbert, H., and Tusell, L. (2021). Feature Selection Stability and Accuracy of Prediction Models for Genomic Prediction of Residual Feed Intake in Pigs Using Machine Learning. Frontiers in Genetics 12, 611506. https://doi.org/10.3389/fgene.2021.611506.
36. Liang, P., Schmitz, C., Lace, B., Ditengou, F.A., Su, C., Schulze, E., Knerr, J., Grosse, R., Keller, J., Libourel, C., Delaux, P.-M., and Ott, T. (2021). Formin-mediated bridging of cell wall, plasma membrane, and cytoskeleton in symbiotic infections of Medicago truncatula. Current Biology 31, 2712–2719.e5. https://doi.org/10.1016/j.cub.2021.04.002.
37. Bernard, M., Rué, O., Mariadassou, M., and Pascal, G. (2021). FROGS: A powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers. Briefings in Bioinformatics 22, bbab318. https://doi.org/10.1093/bib/bbab318.
38. Quilbé, J., Lamy, L., Brottier, L., Leleux, P., Fardoux, J., Rivallan, R., Benichou, T., Guyonnet, R., Becana, M., Villar, I., Garsmeur, O., Hufnagel, B., Delteil, A., Gully, D., Chaintreuil, C., Pervent, M., Cartieaux, F., Bourge, M., Valentin, N., Martin, G., Fontaine, L., Droc, G., Dereeper, A., Farmer, A., Libourel, C., Nouwen, N., Gressent, F., Mournet, P., D’Hont, A., Giraud, E., Klopp, C., and Arrighi, J.-F. (2021). Genetics of nodulation in Aeschynomene evenia uncovers mechanisms of the rhizobium–legume symbiosis. Nature Communications 12, 829. https://doi.org/10.1038/s41467-021-21094-7.
39. Ma, Y., Svanella-Dumas, L., Julian, C., Galzi, S., Fernandez, E., Yvon, M., Pirolles, E., Lefebvre, M., Filloux, D., Roumagnac, P., and Candresse, T. (2021). Genome characterization and diversity of trifolium virus 1: Identification of a novel legume-infecting capulavirus. Archives of Virology 166, 2573–2578. https://doi.org/10.1007/s00705-021-05135-6.
40. García-Galán, A., Baranowski, E., Hygonenq, M.-C., Walch, M., Croville, G., Citti, C., De La Fe, C., and Nouvel, L.-X. (2022). Genome Mosaicism in Field Strains of Mycoplasma bovis as Footprints of In-Host Horizontal Chromosomal Transfer. Applied and Environmental Microbiology 88, e01661–21. https://doi.org/10.1128/AEM.01661-21.
41. Raimondeau, P., Manzi, S., Brucato, N., Kinipi, C., Leavesley, M., Ricaut, F.-X., and Besnard, G. (2021). Genome skims analysis of betel palms (Areca spp., Arecaceae) and development of a profiling method to assess their plastome diversity. Gene 800, 145845. https://doi.org/10.1016/j.gene.2021.145845.
42. Ibrahim, H.M.M., Kusch, S., Didelon, M., and Raffaele, S. (2021). Genome‐wide alternative splicing profiling in the fungal plant pathogen Sclerotinia sclerotiorum during the colonization of diverse host families. Molecular Plant Pathology 22, 31–47. https://doi.org/10.1111/mpp.13006.
43. Brousseau, L., Fine, P.V.A., Dreyer, E., Vendramin, G.G., and Scotti, I. (2021). Genomic and phenotypic divergence unveil microgeographic adaptation in the Amazonian hyperdominant tree Eperua falcata Aubl. (Fabaceae). Molecular Ecology 30, 1136–1154. https://doi.org/10.1111/mec.15595.
44. Ledoux, J., Ghanem, R., Horaud, M., López‐Sendino, P., Romero‐Soriano, V., Antunes, A., Bensoussan, N., Gómez‐Gras, D., Linares, C., Machordom, A., Ocaña, O., Templado, J., Leblois, R., Ben Souissi, J., and Garrabou, J. (2021). Gradients of genetic diversity and differentiation across the distribution range of a Mediterranean coral: Patterns, processes and conservation implications. Diversity and Distributions 27, 2104–2123. https://doi.org/10.1111/ddi.13382.
45. Evariste, L., Braylé, P., Mouchet, F., Silvestre, J., Gauthier, L., Flahaut, E., Pinelli, E., and Barret, M. (2021). Graphene-Based Nanomaterials Modulate Internal Biofilm Interactions and Microbial Diversity. Frontiers in Microbiology 12, 623853. https://doi.org/10.3389/fmicb.2021.623853.
46. Virgoulay, T., Rousset, F., and Leblois, R. (2021). GSpace: An exact coalescence simulator of recombining genomes under isolation by distance. Bioinformatics 37, 3673–3675. https://doi.org/10.1093/bioinformatics/btab261.
47. Ruffini, M., Vucinic, J., De Givry, S.D., Katsirelos, G., Barbe, S., and Schiex, T. (2021). Guaranteed Diversity and Optimality in Cost Function Network Based Computational Protein Design Methods. Algorithms 14, 168. https://doi.org/10.3390/a14060168.
48. Fagny, M., Kuijjer, M.L., Stam, M., Joets, J., Turc, O., Rozière, J., Pateyron, S., Venon, A., and Vitte, C. (2021). Identification of Key Tissue-Specific, Biological Processes by Integrating Enhancer Information in Maize Gene Regulatory Networks. Frontiers in Genetics 11, 606285. https://doi.org/10.3389/fgene.2020.606285.
49. Guichard, M., Dainat, B., Eynard, S., Vignal, A., Servin, B., the Beestrong Consortium, and Neuditschko, M. (2021). Identification of quantitative trait loci associated with calmness and gentleness in honey bees using whole‐genome sequences. Animal Genetics 52, 472–481. https://doi.org/10.1111/age.13070.
50. Teixeira, H., Salmona, J., Arredondo, A., Mourato, B., Manzi, S., Rakotondravony, R., Mazet, O., Chikhi, L., Metzger, J., and Radespiel, U. (2021). Impact of model assumptions on demographic inferences: The case study of two sympatric mouse lemurs in northwestern Madagascar. BMC Ecology and Evolution 21, 197. https://doi.org/10.1186/s12862-021-01929-z.
51. Orozco-Arias, S., Jaimes, P.A., Candamil, M.S., Jiménez-Varón, C.F., Tabares-Soto, R., Isaza, G., and Guyot, R. (2021). InpactorDB: A Classified Lineage-Level Plant LTR Retrotransposon Reference Library for Free-Alignment Methods Based on Machine Learning. Genes 12, 190. https://doi.org/10.3390/genes12020190.
52. Auvray, F., Perrat, A., Arimizu, Y., Chagneau, C.V., Bossuet-Greif, N., Massip, C., Brugère, H., Nougayrède, J.-P., Hayashi, T., Branchu, P., Ogura, Y., and Oswald, E. (2021). Insights into the acquisition of the pks island and production of colibactin in the Escherichia coli population. Microbial Genomics 7. https://doi.org/10.1099/mgen.0.000579.
53. Leroy, T., and Rougemont, Q. (2021). Introduction to Population Genomics Methods. In Molecular Plant Taxonomy, P. Besse, ed. (Springer US), pp. 287–324. https://doi.org/10.1007/978-1-0716-0997-2_16.
54. Leroy, T., Rousselle, M., Tilak, M.-K., Caizergues, A.E., Scornavacca, C., Recuerda, M., Fuchs, J., Illera, J.C., De Swardt, D.H., Blanco, G., Thébaud, C., Milá, B., and Nabholz, B. (2021). Island songbirds as windows into evolution in small populations. Current Biology 31, 1303–1310.e4. https://doi.org/10.1016/j.cub.2020.12.040.
55. Rodríguez-Ramilo, S.T., Reverter, A., and Legarra, A. (2021). Islands of runs of homozygosity indicate selection signatures in Ovis aries 6 (OAR6) of French dairy sheep. JDS Communications 2, 132–136. https://doi.org/10.3168/jdsc.2020-0011.
56. Lefort, G., Liaubet, L., Marty-Gasset, N., Canlet, C., Vialaneix, N., and Servien, R. (2021). Joint Automatic Metabolite Identification and Quantification of a Set of1 H NMR Spectra. Analytical Chemistry 93, 2861–2870. https://doi.org/10.1021/acs.analchem.0c04232.
57. Mariette, J., Olteanu, M., and Vialaneix, N. (2021). Kernel and Dissimilarity Methods for Exploratory Analysis in a Social Context. In Advances in Contemporary Statistics and Econometrics, A. Daouia and A. Ruiz-Gazen, eds. (Springer International Publishing), pp. 669–690. https://doi.org/10.1007/978-3-030-73249-3_34.
58. Payton, L., Hüppe, L., Noirot, C., Hoede, C., Last, K., Wilcockson, D., Ershova, E., Valière, S., and Meyer, B. (2021). L’horloge circadienne et les rythmes transcriptomiques chez une espèce zooplanctonique clé pendant le jour polaire Arctique. Médecine du Sommeil 18, 192–193. https://doi.org/10.1016/j.msom.2021.10.020.
59. Rich, M.K., Vigneron, N., Libourel, C., Keller, J., Xue, L., Hajheidari, M., Radhakrishnan, G.V., Le Ru, A., Diop, S.I., Potente, G., Conti, E., Duijsings, D., Batut, A., Le Faouder, P., Kodama, K., Kyozuka, J., Sallet, E., Bécard, G., Rodriguez-Franco, M., Ott, T., Bertrand-Michel, J., Oldroyd, G.E.D., Szövényi, P., Bucher, M., and Delaux, P.-M. (2021). Lipid exchanges drove the evolution of mutualism during plant terrestrialization. Science 372, 864–868. https://doi.org/10.1126/science.abg0929.
60. Marti-Marimon, M., Vialaneix, N., Lahbib-Mansais, Y., Zytnicki, M., Camut, S., Robelin, D., Yerle-Bouissou, M., and Foissac, S. (2021). Major Reorganization of Chromosome Conformation During Muscle Development in Pig. Frontiers in Genetics 12, 748239. https://doi.org/10.3389/fgene.2021.748239.
61. Mulero, S., Toulza, E., Loisier, A., Zimmerman, M., Allienne, J.-F., Foata, J., Quilichini, Y., Pointier, J.-P., Rey, O., and Boissier, J. (2021). Malacological survey in a bottle of water: A comparative study between manual sampling and environmental DNA metabarcoding approaches. Global Ecology and Conservation 25, e01428. https://doi.org/10.1016/j.gecco.2020.e01428.
62. Azevedo-Favory, J., Gaspin, C., Ayadi, L., Montacié, C., Marchand, V., Jobet, E., Rompais, M., Carapito, C., Motorin, Y., and Sáez-Vásquez, J. (2021). Mapping rRNA 2’-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants. RNA Biology 18, 1760–1777. https://doi.org/10.1080/15476286.2020.1869892.
63. Pocheron, A.-L., Le Dréan, G., Billard, H., Moyon, T., Pagniez, A., Heberden, C., Le Chatelier, E., Darmaun, D., Michel, C., and Parnet, P. (2021). Maternal Microbiota Transfer Programs Offspring Eating Behavior. Frontiers in Microbiology 12, 672224. https://doi.org/10.3389/fmicb.2021.672224.
64. Courtois, P., Rorat, A., Lemiere, S., Guyoneaud, R., Attard, E., Longepierre, M., Rigal, F., Levard, C., Chaurand, P., Grosser, A., Grobelak, A., Kacprzak, M., Lors, C., Richaume, A., and Vandenbulcke, F. (2021). Medium-term effects of Ag supplied directly or via sewage sludge to an agricultural soil on Eisenia fetida earthworm and soil microbial communities. Chemosphere 269, 128761. https://doi.org/10.1016/j.chemosphere.2020.128761.
65. Barroso‐Bergadà, D., Pauvert, C., Vallance, J., Delière, L., Bohan, D.A., Buée, M., and Vacher, C. (2021). Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: Strengths and pitfalls. Molecular Ecology Resources 21, 762–780. https://doi.org/10.1111/1755-0998.13302.
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