Publications

This list includes publications for which the GenoToul Bioinformatics facility has been used (hardware infrastructure, Funding, or Staff members). All Sigenae's publications have used the GenoToul Bioinformatics hardware infrastructure.

2022

1. Allaoua, M., Bonnafé, E., Etienne, P., Noirot, V., Gabarrou, J.-F., Castinel, A., Pascal, G., Darbot, V., Treilhou, M., and Combes, S. (2022). A carvacrol-based product reduces Campylobacter jejuni load and alters microbiota composition in the caeca of chickens. Journal of Applied Microbiology 132, 4501–4516. https://doi.org/10.1111/jam.15521.

2. Mishra, B., Ulaszewski, B., Meger, J., Aury, J.-M., Bodénès, C., Lesur-Kupin, I., Pfenninger, M., Da Silva, C., Gupta, D.K., Guichoux, E., Heer, K., Lalanne, C., Labadie, K., Opgenoorth, L., Ploch, S., Le Provost, G., Salse, J., Scotti, I., Wötzel, S., Plomion, C., Burczyk, J., and Thines, M. (2022). A Chromosome-Level Genome Assembly of the European Beech (Fagus sylvatica) Reveals Anomalies for Organelle DNA Integration, Repeat Content and Distribution of SNPs. Frontiers in Genetics 12, 691058. https://doi.org/10.3389/fgene.2021.691058.

3. Barret, M., Gandois, L., Thalasso, F., Martinez Cruz, K., Sepulveda Jauregui, A., Lavergne, C., Teisserenc, R., Aguilar, P., Gerardo Nieto, O., Etchebehere, C., Martins Dellagnezze, B., Bovio Winkler, P., Fochesatto, G.J., Tananaev, N., Svenning, M.M., Seppey, C., Tveit, A., Chamy, R., Astorga España, M.S., Mansilla, A., Van De Putte, A., Sweetlove, M., Murray, A.E., and Cabrol, L. (2022). A combined microbial and biogeochemical dataset from high-latitude ecosystems with respect to methane cycle. Scientific Data 9, 674. https://doi.org/10.1038/s41597-022-01759-8.

4. Urvois, T., Perrier, C., Roques, A., Sauné, L., Courtin, C., Li, Y., Johnson, A.J., Hulcr, J., Auger-Rozenberg, M.-A., and Kerdelhué, C. (2022). A first inference of the phylogeography of the worldwide invader Xylosandrus compactus. Journal of Pest Science 95, 1217–1231. https://doi.org/10.1007/s10340-021-01443-7.

5. Demars, J., Labrune, Y., Iannuccelli, N., Deshayes, A., Leroux, S., Gilbert, H., Aymard, P., Benitez, F., and Riquet, J. (2022). A genome-wide epistatic network underlies the molecular architecture of continuous color variation of body extremities. Genomics 114, 110361. https://doi.org/10.1016/j.ygeno.2022.110361.

6. Dunière, L., Renaud, J.B., Steele, M.A., Achard, C.S., Forano, E., and Chaucheyras-Durand, F. (2022). A live yeast supplementation to gestating ewes improves bioactive molecule composition in colostrum with no impact on its bacterial composition and beneficially affects immune status of the offspring. Journal of Nutritional Science 11, e5. https://doi.org/10.1017/jns.2022.3.

7. Beaumont, M., Lencina, C., Painteaux, L., Viémon-Desplanque, J., Phornlaphat, O., Lambert, W., and Chalvon-Demersay, T. (2022). A mix of functional amino acids and grape polyphenols promotes the growth of piglets, modulates the gut microbiota in vivo and regulates epithelial homeostasis in intestinal organoids. Amino Acids 54, 1357–1369. https://doi.org/10.1007/s00726-021-03082-9.

8. Quilbé, J., Nouwen, N., Pervent, M., Guyonnet, R., Cullimore, J., Gressent, F., Araújo, N.H., Gully, D., Klopp, C., Giraud, E., and Arrighi, J.-F. (2022). A mutant-based analysis of the establishment of Nod-independent symbiosis in the legume Aeschynomene evenia. Plant Physiology 190, 1400–1417. https://doi.org/10.1093/plphys/kiac325.

9. Wen, M., Pan, Q., Jouanno, E., Montfort, J., Zahm, M., Cabau, C., Klopp, C., Iampietro, C., Roques, C., Bouchez, O., Castinel, A., Donnadieu, C., Parrinello, H., Poncet, C., Belmonte, E., Gautier, V., Avarre, J., Dugue, R., Gustiano, R., Hà, T.T.T., Campet, M., Sriphairoj, K., Ribolli, J., De Almeida, F.L., Desvignes, T., Postlethwait, J.H., Bucao, C.F., Robinson‐Rechavi, M., Bobe, J., Herpin, A., and Guiguen, Y. (2022). An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family. Molecular Ecology Resources 22, 2411–2428. https://doi.org/10.1111/1755-0998.13620.

10. Bouchiba, Y., Esque, J., Cottret, L., Maréchaux, M., Gaston, M., Gasciolli, V., Keller, J., Nouwen, N., Gully, D., Arrighi, J., Gough, C., Lefebvre, B., Barbe, S., and Bono, J. (2022). An integrated approach reveals how lipo‐chitooligosaccharides interact with the lysin motif receptor‐like kinase MtLYR3. Protein Science 31, e4327. https://doi.org/10.1002/pro.4327.

11. Mariette, J., Blanchard, O., Berné, O., Aumont, O., Carrey, J., Ligozat, A., Lellouch, E., Roche, P.-E., Guennebaud, G., Thanwerdas, J., Bardou, P., Salin, G., Maigne, E., Servan, S., and Ben-Ari, T. (2022). An open-source tool to assess the carbon footprint of research. Environmental Research: Infrastructure and Sustainability 2, 035008. https://doi.org/10.1088/2634-4505/ac84a4.

12. Payton, L., Noirot, C., Last, K.S., Grigor, J., Hüppe, L., Conway, D.V.P., Dannemeyer, M., Suin, A., and Meyer, B. (2022). Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus. Ecology and Evolution 12, e8605. https://doi.org/10.1002/ece3.8605.

13. Simon, M., Durand, S., Ricou, A., Vrielynck, N., Mayjonade, B., Gouzy, J., Boyer, R., Roux, F., Camilleri, C., and Budar, F. (2022). APOK3 , a pollen killer antidote in Arabidopsis thaliana. Genetics 221, iyac089. https://doi.org/10.1093/genetics/iyac089.

14. Orozco-Arias, S., Candamil-Cortes, M.S., Jaimes, P.A., Valencia-Castrillon, E., Tabares-Soto, R., Isaza, G., and Guyot, R. (2022). Automatic curation of LTR retrotransposon libraries from plant genomes through machine learning. Journal of Integrative Bioinformatics 19, 20210036. https://doi.org/10.1515/jib-2021-0036.

15. Koutsovoulos, G.D., Granjeon Noriot, S., Bailly-Bechet, M., Danchin, E.G.J., and Rancurel, C. (2022). AvP: A software package for automatic phylogenetic detection of candidate horizontal gene transfers. PLOS Computational Biology 18, e1010686. https://doi.org/10.1371/journal.pcbi.1010686.

16. Battaglia-Brunet, F., Naveau, A., Cary, L., Bueno, M., Briais, J., Charron, M., Joulian, C., and Thouin, H. (2022). Biogeochemical behaviour of geogenic As in a confined aquifer of the Sologne region, France. Chemosphere 304, 135252. https://doi.org/10.1016/j.chemosphere.2022.135252.

17. Pichot, C., Djari, A., Tran, J., Verdenaud, M., Marande, W., Huneau, C., Gautier, V., Latrasse, D., Arribat, S., Sommard, V., Troadec, C., Poncet, C., Bendahmane, M., Szecsi, J., Dogimont, C., Salse, J., Benhamed, M., Zouine, M., Boualem, A., and Bendahmane, A. (2022). Cantaloupe melon genome reveals 3D chromatin features and structural relationship with the ancestral cucurbitaceae karyotype. iScience 25, 103696. https://doi.org/10.1016/j.isci.2021.103696.

18. Courbin, V., Riller, Q., Amegnizin, J.-L., Gricourt, G., Demontant, V., Fihman, V., Angebault, C., Mahevas, M., Gaube, G., Coutte, L., Pawlotsky, J.-M., Lepeule, R., Rodriguez, C., and Woerther, P.-L. (2022). Case Report: Cerebral Nocardiosis Caused by Nocardia cyriacigeorgica Detected by Metagenomics in an Apparently Immunocompetent Patient. Frontiers in Immunology 13, 719124. https://doi.org/10.3389/fimmu.2022.719124.

19. Changey, F., Nunan, N., Herrmann, A.M., and Lerch, T.Z. (2022). Catching change in microbial diversity indicators under different soil organic matter managements: Higher taxonomic resolution, better discrimination? Ecological Indicators 139, 108897. https://doi.org/10.1016/j.ecolind.2022.108897.

20. Côte, J., Jacquin, L., Veyssière, C., Manzi, S., Etienne, R., Perrault, A., Cambon, M.C., Jean, S., and White, J. (2022). Changes in fish skin microbiota along gradients of eutrophication in human-altered rivers. FEMS Microbiology Ecology 98, fiac006. https://doi.org/10.1093/femsec/fiac006.

21. Wen, M., Pan, Q., Larson, W., Eché, C., and Guiguen, Y. (2023). Characterization of the sex determining region of channel catfish (Ictalurus punctatus) and development of a sex-genotyping test. Gene 850, 146933. https://doi.org/10.1016/j.gene.2022.146933.

22. Brucato, N., André, M., Hudjashov, G., Mondal, M., Cox, M.P., Leavesley, M., and Ricaut, F.-X. (2022). Chronology of natural selection in Oceanian genomes. iScience 25, 104583. https://doi.org/10.1016/j.isci.2022.104583.

23. Eljebbawi, A., Savelli, B., Libourel, C., Estevez, J.M., and Dunand, C. (2022). Class III Peroxidases in Response to Multiple Abiotic Stresses in Arabidopsis thaliana Pyrenean Populations. International Journal of Molecular Sciences 23, 3960. https://doi.org/10.3390/ijms23073960.

24. Lesturgie, P., Planes, S., and Mona, S. (2022). Coalescence times, life history traits and conservation concerns: An example from four coastal shark species from the Indo‐Pacific. Molecular Ecology Resources 22, 554–566. https://doi.org/10.1111/1755-0998.13487.

25. Malkócs, T., Viricel, A., Becquet, V., Evin, L., Dubillot, E., and Pante, E. (2022). Complex mitogenomic rearrangements within the Pectinidae (Mollusca: Bivalvia). BMC Ecology and Evolution 22, 29. https://doi.org/10.1186/s12862-022-01976-0.

26. Wragg, D., Eynard, S.E., Basso, B., Canale‐Tabet, K., Labarthe, E., Bouchez, O., Bienefeld, K., Bieńkowska, M., Costa, C., Gregorc, A., Kryger, P., Parejo, M., Pinto, M.A., Bidanel, J., Servin, B., Le Conte, Y., and Vignal, A. (2022). Complex population structure and haplotype patterns in the Western European honey bee from sequencing a large panel of haploid drones. Molecular Ecology Resources 22, 3068–3086. https://doi.org/10.1111/1755-0998.13665.

27. Orozco-Arias, S., Candamil, M.S., Jaimes, P.A., Cristancho, M., Tabares-Soto, R., and Guyot, R. (2022). Composition and Diversity of LTR Retrotransposons in the Coffee Leaf Rust Genome (Hemileia vastatrix). Agronomy 12, 1665. https://doi.org/10.3390/agronomy12071665.

28. Kalachova, T., Jindřichová, B., Burketová, L., Monard, C., Blouin, M., Jacquiod, S., Ruelland, E., and Puga-Freitas, R. (2023). Controlled natural selection of soil microbiome through plant-soil feedback confers resistance to a foliar pathogen. Plant and Soil 485, 181–195. https://doi.org/10.1007/s11104-022-05597-w.

29. Chevignon, G., Dotto-Maurel, A., Serpin, D., Chollet, B., and Arzul, I. (2022). De Novo Transcriptome Assembly and Analysis of the Flat Oyster Pathogenic Protozoa Bonamia Ostreae. Frontiers in Cellular and Infection Microbiology 12, 921136. https://doi.org/10.3389/fcimb.2022.921136.

30. Beaumont, M., Mussard, E., Barilly, C., Lencina, C., Gress, L., Painteaux, L., Gabinaud, B., Cauquil, L., Aymard, P., Canlet, C., Paës, C., Knudsen, C., and Combes, S. (2022). Developmental Stage, Solid Food Introduction, and Suckling Cessation Differentially Influence the Comaturation of the Gut Microbiota and Intestinal Epithelium in Rabbits. The Journal of Nutrition 152, 723–736. https://doi.org/10.1093/jn/nxab411.

31. Pecrix, Y., Sallet, E., Moreau, S., Bouchez, O., Carrere, S., Gouzy, J., Jardinaud, M.-F., and Gamas, P. (2022). DNA demethylation and hypermethylation are both required for late nodule development in Medicago. Nature Plants 8, 741–749. https://doi.org/10.1038/s41477-022-01188-w.

32. Azzouzi, N., Guillory, A.-S., Chaudieu, G., and Galibert, F. (2022). Dog olfactory receptor gene expression profiling using samples derived from nasal epithelium brushing. Canine Medicine and Genetics 9, 7. https://doi.org/10.1186/s40575-022-00116-7.

33. Paës, C., Gidenne, T., Bébin, K., Duperray, J., Gohier, C., Guené-Grand, E., Rebours, G., Barilly, C., Gabinaud, B., Cauquil, L., Castinel, A., Pascal, G., Darbot, V., Aymard, P., Debrusse, A.-M., Beaumont, M., and Combes, S. (2022). Early Introduction of Plant Polysaccharides Drives the Establishment of Rabbit Gut Bacterial Ecosystems and the Acquisition of Microbial Functions. mSystems 7, e00243–22. https://doi.org/10.1128/msystems.00243-22.

34. Lesturgie, P., Lainé, H., Suwalski, A., Chifflet-Belle, P., Maisano Delser, P., Clua, E., Jaquemet, S., Magalon, H., and Mona, S. (2022). Ecological and biogeographic features shaped the complex evolutionary history of an iconic apex predator (Galeocerdo cuvier). BMC Ecology and Evolution 22, 147. https://doi.org/10.1186/s12862-022-02100-y.

35. Hu, J., Vandenkoornhuyse, P., Khalfallah, F., Causse‐Védrines, R., and Mony, C. (2023). Ecological corridors homogenize plant root endospheric mycobiota. New Phytologist 237, 1347–1362. https://doi.org/10.1111/nph.18606.

36. Malsa, J., Courtot, É., Boisseau, M., Dumont, B., Gombault, P., Kuzmina, T.A., Basiaga, M., Lluch, J., Annonay, G., Dhorne-Pollet, S., Mach, N., Sutra, J.-F., Wimel, L., Dubois, C., Guégnard, F., Serreau, D., Lespine, A., Sallé, G., and Fleurance, G. (2022). Effect of sainfoin ( Onobrychis viciifolia ) on cyathostomin eggs excretion, larval development, larval community structure and efficacy of ivermectin treatment in horses. Parasitology 149, 1439–1449. https://doi.org/10.1017/S0031182022000853.

37. Gaudino, M., Chiapponi, C., Moreno, A., Zohari, S., O’Donovan, T., Quinless, E., Sausy, A., Oliva, J., Salem, E., Fusade-Boyer, M., Meyer, G., Hübschen, J.M., Saegerman, C., Ducatez, M.F., and Snoeck, C.J. (2022). Evolutionary and temporal dynamics of emerging influenza D virus in Europe (2009–22). Virus Evolution 8, veac081. https://doi.org/10.1093/ve/veac081.

38. Villain, P., Catchpole, R., Forterre, P., Oberto, J., Da Cunha, V., and Basta, T. (2022). Expanded Dataset Reveals the Emergence and Evolution of DNA Gyrase in Archaea. Molecular Biology and Evolution 39, msac155. https://doi.org/10.1093/molbev/msac155.

39. Brouard, C., Mariette, J., Flamary, R., and Vialaneix, N. (2022). Feature selection for kernel methods in systems biology. NAR Genomics and Bioinformatics 4, lqac014. https://doi.org/10.1093/nargab/lqac014.

40. Pedro, N., Brucato, N., Cavadas, B., Lisant, V., Camacho, R., Kinipi, C., Leavesley, M., Pereira, L., and Ricaut, F. (2023). First insight into oral microbiome diversity in Papua New Guineans reveals a specific regional signature. Molecular Ecology 32, 2551–2564. https://doi.org/10.1111/mec.16702.

41. Fruleux, A., Duclercq, J., Dubois, F., and Decocq, G. (2023). First report of ectomycorrhizae in Prunus serotina in the exotic range. Plant and Soil 484, 171–181. https://doi.org/10.1007/s11104-022-05780-z.

42. Robic, A., Cerutti, C., Demars, J., and Kühn, C. (2022). From the comparative study of a circRNA originating from an mammalian ATXN2L intron to understanding the genesis of intron lariat-derived circRNAs. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1865, 194815. https://doi.org/10.1016/j.bbagrm.2022.194815.

43. Dupin, J., Hong-Wa, C., Pillon, Y., and Besnard, G. (2022). From the Mediterranean to the Pacific: Re-circumscription towards Notelaea s.l. And historical biogeography of a generic complex in Oleinae (Oleaceae). Botanical Journal of the Linnean Society 200, 360–377. https://doi.org/10.1093/botlinnean/boac024.

44. Vidal-Dupiol, J., Harscouet, E., Shefy, D., Toulza, E., Rey, O., Allienne, J.-F., Mitta, G., and Rinkevich, B. (2022). Frontloading of stress response genes enhances robustness to environmental change in chimeric corals. BMC Biology 20, 167. https://doi.org/10.1186/s12915-022-01371-7.

45. Le Provost, G., Brachi, B., Lesur, I., Lalanne, C., Labadie, K., Aury, J.-M., Da Silva, C., Postolache, D., Leroy, T., and Plomion, C. (2022). Gene expression and genetic divergence in oak species highlight adaptive genes to soil water constraints. Plant Physiology 190, 2466–2483. https://doi.org/10.1093/plphys/kiac420.

46. Brener-Raffalli, K., Vidal-Dupiol, J., Adjeroud, M., Rey, O., Romans, P., Bonhomme, F., Pratlong, M., Haguenauer, A., Pillot, R., Feuillassier, L., Claereboudt, M., Magalon, H., Gélin, P., Pontarotti, P., Aurelle, D., Mitta, G., and Toulza, E. (2022). Gene expression plasticity and frontloading promote thermotolerance in Pocillopora corals. Peer Community Journal 2, e13. https://doi.org/10.24072/pcjournal.79.

47. Pomiès, L., Brouard, C., Duruflé, H., Maigné, É., Carré, C., Gody, L., Trösser, F., Katsirelos, G., Mangin, B., Langlade, N.B., and De Givry, S. (2022). Gene regulatory network inference methodology for genomic and transcriptomic data acquired in genetically related heterozygote individuals. Bioinformatics 38, 4127–4134. https://doi.org/10.1093/bioinformatics/btac445.

48. Fuchs, S., Babin, L., Andraos, E., Bessiere, C., Willier, S., Schulte, J.H., Gaspin, C., and Meggetto, F. (2022). Generation of full-length circular RNA libraries for Oxford Nanopore long-read sequencing. PLOS ONE 17, e0273253. https://doi.org/10.1371/journal.pone.0273253.

49. Mohammadpanah, M., Ayatollahi Mehrgardi, A., Gilbert, H., Larzul, C., Mercat, M.-J., Esmailizadeh, A., Momen, M., and Tusell, L. (2022). Genic and non-genic SNP contributions to additive and dominance genetic effects in purebred and crossbred pig traits. Scientific Reports 12, 3795. https://doi.org/10.1038/s41598-022-07767-3.

50. García-Galán, A., Baranowski, E., Hygonenq, M.-C., Walch, M., Croville, G., Citti, C., De La Fe, C., and Nouvel, L.-X. (2022). Genome Mosaicism in Field Strains of Mycoplasma bovis as Footprints of In-Host Horizontal Chromosomal Transfer. Applied and Environmental Microbiology 88, e01661–21. https://doi.org/10.1128/AEM.01661-21.

51. Mesbah-Uddin, M., Guldbrandtsen, B., Capitan, A., Lund, M.S., Boichard, D., and Sahana, G. (2022). Genome-wide association study with imputed whole-genome sequence variants including large deletions for female fertility in 3 Nordic dairy cattle breeds. Journal of Dairy Science 105, 1298–1313. https://doi.org/10.3168/jds.2021-20655.

52. Saleh, D., Chen, J., Leplé, J.-C., Leroy, T., Truffaut, L., Dencausse, B., Lalanne, C., Labadie, K., Lesur, I., Bert, D., Lagane, F., Morneau, F., Aury, J.-M., Plomion, C., Lascoux, M., and Kremer, A. (2022). Genome-wide evolutionary response of European oaks during the Anthropocene. Evolution Letters 6, 4–20. https://doi.org/10.1002/evl3.269.

53. Bellec, L., Le Du-Carré, J., Almeras, F., Durand, L., Cambon-Bonavita, M.-A., Danion, M., and Morin, T. (2022). Glyphosate-based herbicide exposure: Effects on gill microbiota of rainbow trout ( Oncorhynchus mykiss ) and the aquatic bacterial ecosystem. FEMS Microbiology Ecology 98, fiac076. https://doi.org/10.1093/femsec/fiac076.

54. Evariste, L., Mouchet, F., Pinelli, E., Flahaut, E., Gauthier, L., and Barret, M. (2023). Gut microbiota impairment following graphene oxide exposure is associated to physiological alterations in Xenopus laevis tadpoles. Science of The Total Environment 857, 159515. https://doi.org/10.1016/j.scitotenv.2022.159515.

55. Garcia-Baccino, C.A., Pineda-Quiroga, C., Astruc, J.M., Ugarte, E., and Legarra, A. (2022). High genetic correlation for milk yield across Manech and Latxa dairy sheep from France and Spain. JDS Communications 3, 260–264. https://doi.org/10.3168/jdsc.2021-0195.

56. Fiteni, E., Durand, K., Gimenez, S., Meagher, R.L., Legeai, F., Kergoat, G.J., Nègre, N., d’Alençon, E., and Nam, K. (2022). Host-plant adaptation as a driver of incipient speciation in the fall armyworm (Spodoptera frugiperda). BMC Ecology and Evolution 22, 133. https://doi.org/10.1186/s12862-022-02090-x.

57. Bertucci, A., Hoede, C., Dassié, E., Gourves, P.-Y., Suin, A., Le Menach, K., Budzinski, H., and Daverat, F. (2022). Impact of environmental micropollutants and diet composition on the gut microbiota of wild european eels (Anguilla anguilla). Environmental Pollution 314, 120207. https://doi.org/10.1016/j.envpol.2022.120207.

58. Valette, N., Legout, A., Goodell, B., Alfredsen, G., Auer, L., Gelhaye, E., and Derrien, D. (2023). Impact of Norway spruce pre-degradation stages induced by Gloeophyllum trabeum on fungal and bacterial communities. Fungal Ecology 61, 101188. https://doi.org/10.1016/j.funeco.2022.101188.

59. Darriaut, R., Tran, J., Martins, G., Ollat, N., Masneuf-Pomarède, I., and Lauvergeat, V. (2023). In grapevine decline, microbiomes are affected differently in symptomatic and asymptomatic soils. Applied Soil Ecology 183, 104767. https://doi.org/10.1016/j.apsoil.2022.104767.

60. Orozco-Arias, S., Humberto Lopez-Murillo, L., Candamil-Cortés, M.S., Arias, M., Jaimes, P.A., Rossi Paschoal, A., Tabares-Soto, R., Isaza, G., and Guyot, R. (2023). Inpactor2: A software based on deep learning to identify and classify LTR-retrotransposons in plant genomes. Briefings in Bioinformatics 24, bbac511. https://doi.org/10.1093/bib/bbac511.

61. Bartha, L., Mandáková, T., Kovařík, A., Bulzu, P., Rodde, N., Mahelka, V., Lysak, M.A., Fustier, M., Šafář, J., Cápal, P., Keresztes, L., and Banciu, H.L. (2022). Intact ribosomal DNA arrays of potentilla origin detected in erythronium nucleus suggest recent eudicot‐to‐monocot horizontal transfer. New Phytologist 235, 1246–1259. https://doi.org/10.1111/nph.18171.

62. Cohen, H., Hoede, C., Scharte, F., Coluzzi, C., Cohen, E., Shomer, I., Mallet, L., Holbert, S., Serre, R.F., Schiex, T., Virlogeux-Payant, I., Grassl, G.A., Hensel, M., Chiapello, H., and Gal-Mor, O. (2022). Intracellular Salmonella Paratyphi A is motile and differs in the expression of flagella-chemotaxis, SPI-1 and carbon utilization pathways in comparison to intracellular S. Typhimurium. PLOS Pathogens 18, e1010425. https://doi.org/10.1371/journal.ppat.1010425.

63. Pavinato, V.A.C., De Mita, S., Marin, J.-M., and De Navascués, M. (2022). Joint inference of adaptive and demographic history from temporal population genomic data. Peer Community Journal 2, e78. https://doi.org/10.24072/pcjournal.203.

64. Hévin, N.M.‐C., Hansen, S., Addison, P., Benoit, L., Kergoat, G.J., and Haran, J. (2022). Late Cenozoic environmental changes drove the diversification of a weevil genus endemic to the Cape Floristic Region. Zoologica Scripta 51, 724–740. https://doi.org/10.1111/zsc.12563.

65. Douchet, P., Boissier, J., Mulero, S., Ferté, H., Doberva, M., Allienne, J., Toulza, E., Bethune, K., and Rey, O. (2022). Make visible the invisible: Optimized development of an environmental DNA metabarcoding tool for the characterization of trematode parasitic communities. Environmental DNA 4, 627–641. https://doi.org/10.1002/edn3.273.

66. Mazenc, A., Mervant, L., Maslo, C., Lencina, C., Bézirard, V., Levêque, M., Ahn, I., Alquier-Bacquié, V., Naud, N., Héliès-Toussaint, C., Debrauwer, L., Chevolleau, S., Guéraud, F., Pierre, F.H.F., Théodorou, V., and Olier, M. (2022). Maternal heme-enriched diet promotes a gut pro-oxidative status associated with microbiota alteration, gut leakiness and glucose intolerance in mice offspring. Redox Biology 53, 102333. https://doi.org/10.1016/j.redox.2022.102333.

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