Publications¶
This list includes publications for which the GenoToul Bioinformatics facility has been used (hardware infrastructure, Funding, or Staff members). All Sigenae's publications have used the GenoToul Bioinformatics hardware infrastructure.
2019¶
1. Thomas, A., Barriere, S., Broseus, L., Brooke, J., Lorenzi, C., Villemin, J.-P., Beurier, G., Sabatier, R., Reynes, C., Mancheron, A., and Ritchie, W. (2019). GECKO is a genetic algorithm to classify and explore high throughput sequencing data. Communications Biology 2, 222. https://doi.org/10.1038/s42003-019-0456-9.
2. Savelli, B., Li, Q., Webber, M., Jemmat, A.M., Robitaille, A., Zamocky, M., Mathé, C., and Dunand, C. (2019). RedoxiBase: A database for ROS homeostasis regulated proteins. Redox Biology 26, 101247. https://doi.org/10.1016/j.redox.2019.101247.
3. Cruaud, A., Nidelet, S., Arnal, P., Weber, A., Fusu, L., Gumovsky, A., Huber, J., Polaszek, A., and Rasplus, J. (2019). Optimized DNA extraction and library preparation for minute arthropods: Application to target enrichment in chalcid wasps used for biocontrol. Molecular Ecology Resources 19, 702–710. https://doi.org/10.1111/1755-0998.13006.
4. Lalis, A., Mona, S., Stoetzel, E., Bonhomme, F., Souttou, K., Ouarour, A., Aulagnier, S., Denys, C., and Nicolas, V. (2019). Out of Africa: Demographic and colonization history of the Algerian mouse (Mus spretus Lataste). Heredity 122, 150–171. https://doi.org/10.1038/s41437-018-0089-7.
5. Pante, E., Becquet, V., Viricel, A., and Garcia, P. (2019). Investigation of the molecular signatures of selection on ATP synthase genes in the marine bivalve Limecola balthica. Aquatic Living Resources 32, 3. https://doi.org/10.1051/alr/2019001.
6. Vagner, M., Pante, E., Viricel, A., Lacoue-Labarthe, T., Zambonino-Infante, J.-L., Quazuguel, P., Dubillot, E., Huet, V., Le Delliou, H., Lefrançois, C., and Imbert-Auvray, N. (2019). Ocean warming combined with lower omega-3 nutritional availability impairs the cardio-respiratory function of a marine fish. Journal of Experimental Biology, jeb.187179. https://doi.org/10.1242/jeb.187179.
7. Nagnan-Le Meillour, P., Descamps, A., Le Danvic, C., Grandmougin, M., Saliou, J.-M., Klopp, C., Milhes, M., Bompard, C., Chesneau, D., Poissenot, K., and Keller, M. (2019). Identification of potential chemosignals in the European water vole Arvicola terrestris. Scientific Reports 9, 18378. https://doi.org/10.1038/s41598-019-54935-z.
8. Dalmon, A., Gayral, P., Decante, D., Klopp, C., Bigot, D., Thomasson, M., Herniou, E.A., Alaux, C., and Le Conte, Y. (2019). Viruses in the Invasive Hornet Vespa velutina. Viruses 11, 1041. https://doi.org/10.3390/v11111041.
9. Kottler, V.A., Feron, R., Nanda, I., Klopp, C., Du, K., Kneitz, S., Helmprobst, F., Lamatsch, D.K., Lopez-Roques, C., Lluch, J., Journot, L., Parrinello, H., Guiguen, Y., and Schartl, M. (2020). Independent Origin of XY and ZW Sex Determination Mechanisms in Mosquitofish Sister Species. Genetics 214, 193–209. https://doi.org/10.1534/genetics.119.302698.
10. Goñi-Urriza, M., Klopp, C., Ranchou-Peyruse, M., Ranchou-Peyruse, A., Monperrus, M., Khalfaoui-Hassani, B., and Guyoneaud, R. (2020). Genome insights of mercury methylation among Desulfovibrio and Pseudodesulfovibrio strains. Research in Microbiology 171, 3–12. https://doi.org/10.1016/j.resmic.2019.10.003.
11. Péden, R., Poupin, P., Sohm, B., Flayac, J., Giambérini, L., Klopp, C., Louis, F., Pain-Devin, S., Potet, M., Serre, R.-F., and Devin, S. (2019). Environmental transcriptomes of invasive dreissena, a model species in ecotoxicology and invasion biology. Scientific Data 6, 234. https://doi.org/10.1038/s41597-019-0252-x.
12. Striberny, A., Jørgensen, E.H., Klopp, C., and Magnanou, E. (2019). Arctic charr brain transcriptome strongly affected by summer seasonal growth but only subtly by feed deprivation. BMC Genomics 20, 529. https://doi.org/10.1186/s12864-019-5874-z.
13. Ipoutcha, T., Tsarmpopoulos, I., Talenton, V., Gaspin, C., Moisan, A., Walker, C.A., Brownlie, J., Blanchard, A., Thebault, P., and Sirand-Pugnet, P. (2019). Multiple Origins and Specific Evolution of CRISPR/Cas9 Systems in Minimal Bacteria (Mollicutes). Frontiers in Microbiology 10, 2701. https://doi.org/10.3389/fmicb.2019.02701.
14. Polonais, V., Niehus, S., Wawrzyniak, I., Franchet, A., Gaspin, C., Belkorchia, A., Reichstadt, M., Belser, C., Labadie, K., Couloux, A., Delbac, F., Peyretaillade, E., and Ferrandon, D. (2019). Draft Genome Sequence of Tubulinosema ratisbonensis, a Microsporidian Species Infecting the Model Organism Drosophila melanogaster. Microbiology Resource Announcements 8, e00077–19. https://doi.org/10.1128/MRA.00077-19.
15. Croce, S., Lesluyes, T., Delespaul, L., Bonhomme, B., Pérot, G., Velasco, V., Mayeur, L., Rebier, F., Ben Rejeb, H., Guyon, F., McCluggage, W.G., Floquet, A., Querleu, D., Chakiba, C., Devouassoux‐Shisheboran, M., Mery, E., Arnould, L., Averous, G., Soubeyran, I., Le Guellec, S., and Chibon, F. (2019). GREB1‐CTNNB1 fusion transcript detected by RNA‐sequencing in a uterine tumor resembling ovarian sex cord tumor (UTROSCT): A novel CTNNB1 rearrangement. Genes, Chromosomes and Cancer 58, 155–163. https://doi.org/10.1002/gcc.22694.
16. Robic, A., Morisson, M., Leroux, S., Gourichon, D., Vignal, A., Thebault, N., Fillon, V., Minvielle, F., Bed’Hom, B., Zerjal, T., and Pitel, F. (2019). Two new structural mutations in the 5′ region of the ASIP gene cause diluted feather color phenotypes in Japanese quail. Genetics Selection Evolution 51, 12. https://doi.org/10.1186/s12711-019-0458-6.
17. Robic, A., Faraut, T., Djebali, S., Weikard, R., Feve, K., Maman, S., and Kuehn, C. (2019). Analysis of pig transcriptomes suggests a global regulation mechanism enabling temporary bursts of circular RNAs. RNA Biology 16, 1190–1204. https://doi.org/10.1080/15476286.2019.1621621.
18. Milon, N., Fuentes Rojas, J.-L., Castinel, A., Bigot, L., Bouwmans, G., Baudelle, K., Boutonnet, A., Gibert, A., Bouchez, O., Donnadieu, C., Ginot, F., and Bancaud, A. (2020). A tunable filter for high molecular weight DNA selection and linked-read sequencing. Lab on a Chip 20, 175–184. https://doi.org/10.1039/C9LC00965E.
19. Godefroid, M., Meseguer, A.S., Sauné, L., Genson, G., Streito, J.-C., Rossi, J.-P., Zaldívar Riverón, A., Mayer, F., Cruaud, A., and Rasplus, J.-Y. (2019). Restriction-site associated DNA markers provide new insights into the evolutionary history of the bark beetle genus Dendroctonus. Molecular Phylogenetics and Evolution 139, 106528. https://doi.org/10.1016/j.ympev.2019.106528.
20. Girollet, N., Rubio, B., Lopez-Roques, C., Valière, S., Ollat, N., and Bert, P.-F. (2019). De novo phased assembly of the Vitis riparia grape genome. Scientific Data 6, 127. https://doi.org/10.1038/s41597-019-0133-3.
21. Dardaillon, J., Dauga, D., Simion, P., Faure, E., Onuma, T.A., DeBiasse, M.B., Louis, A., Nitta, K.R., Naville, M., Besnardeau, L., Reeves, W., Wang, K., Fagotto, M., Guéroult-Bellone, M., Fujiwara, S., Dumollard, R., Veeman, M., Volff, J.-N., Roest Crollius, H., Douzery, E., Ryan, J.F., Davidson, B., Nishida, H., Dantec, C., and Lemaire, P. (2019). ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates. Nucleic Acids Research, gkz955. https://doi.org/10.1093/nar/gkz955.
22. De Jode, A., David, R., Haguenauer, A., Cahill, A.E., Erga, Z., Guillemain, D., Sartoretto, S., Rocher, C., Selva, M., Le Gall, L., Féral, J.-P., and Chenuil, A. (2019). From seascape ecology to population genomics and back. Spatial and ecological differentiation among cryptic species of the red algae Lithophyllum stictiforme/L. Cabiochiae, main bioconstructors of coralligenous habitats. Molecular Phylogenetics and Evolution 137, 104–113. https://doi.org/10.1016/j.ympev.2019.04.005.
23. Maisano Delser, P., Corrigan, S., Duckett, D., Suwalski, A., Veuille, M., Planes, S., Naylor, G.J.P., and Mona, S. (2019). Demographic inferences after a range expansion can be biased: The test case of the blacktip reef shark (Carcharhinus melanopterus). Heredity 122, 759–769. https://doi.org/10.1038/s41437-018-0164-0.
24. Bouteiller, X.P., Verdu, C.F., Aikio, E., Bloese, P., Dainou, K., Delcamp, A., De Thier, O., Guichoux, E., Mengal, C., Monty, A., Pucheu, M., Van Loo, M., Josée Porté, A., Lassois, L., and Mariette, S. (2019). A few north Appalachian populations are the source of European black locust. Ecology and Evolution 9, 2398–2414. https://doi.org/10.1002/ece3.4776.
25. Le Boulch, M., Déhais, P., Combes, S., and Pascal, G. (2019). The MACADAM database: A MetAboliC pAthways DAtabase for Microbial taxonomic groups for mining potential metabolic capacities of archaeal and bacterial taxonomic groups. Database 2019. https://doi.org/10.1093/database/baz049.
26. Vignal, A., Boitard, S., Thébault, N., Dayo, G., Yapi‐Gnaore, V., Youssao Abdou Karim, I., Berthouly‐Salazar, C., Pálinkás‐Bodzsár, N., Guémené, D., Thibaud‐Nissen, F., Warren, W.C., Tixier‐Boichard, M., and Rognon, X. (2019). A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes. Molecular Ecology Resources 19, 997–1014. https://doi.org/10.1111/1755-0998.13017.
27. Dordet-Frisoni, E., Faucher, M., Sagné, E., Baranowski, E., Tardy, F., Nouvel, L.X., and Citti, C. (2019). Mycoplasma Chromosomal Transfer: A Distributive, Conjugative Process Creating an Infinite Variety of Mosaic Genomes. Frontiers in Microbiology 10, 2441. https://doi.org/10.3389/fmicb.2019.02441.
28. Ambroise, C., Dehman, A., Neuvial, P., Rigaill, G., and Vialaneix, N. (2019). Adjacency-constrained hierarchical clustering of a band similarity matrix with application to genomics. Algorithms for Molecular Biology 14, 22. https://doi.org/10.1186/s13015-019-0157-4.
29. Hérault, F., Houée-Bigot, M., Baéza, E., Bouchez, O., Esquerré, D., Klopp, C., and Diot, C. (2019). RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed. BMC Genomics 20, 13. https://doi.org/10.1186/s12864-018-5415-1.
30. Fusade-Boyer, M., Pato, P.S., Komlan, M., Dogno, K., Jeevan, T., Rubrum, A., Kouakou, C.K., Couacy-Hymann, E., Batawui, D., Go-Maro, E., McKenzie, P., Webby, R.J., and Ducatez, M.F. (2019). Evolution of Highly Pathogenic Avian Influenza A(H5N1) Virus in Poultry, Togo, 2018. Emerging Infectious Diseases 25, 2287–2289. https://doi.org/10.3201/eid2512.190054.
31. Willemsen, A., and Bravo, I.G. (2019). Origin and evolution of papillomavirus (onco)genes and genomes. Philosophical Transactions of the Royal Society B: Biological Sciences 374, 20180303. https://doi.org/10.1098/rstb.2018.0303.
32. Pan, Q., Feron, R., Yano, A., Guyomard, R., Jouanno, E., Vigouroux, E., Wen, M., Busnel, J.-M., Bobe, J., Concordet, J.-P., Parrinello, H., Journot, L., Klopp, C., Lluch, J., Roques, C., Postlethwait, J., Schartl, M., Herpin, A., and Guiguen, Y. (2019). Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation. PLOS Genetics 15, e1008013. https://doi.org/10.1371/journal.pgen.1008013.
33. Pampouille, E., Hennequet-Antier, C., Praud, C., Juanchich, A., Brionne, A., Godet, E., Bordeau, T., Fagnoul, F., Le Bihan-Duval, E., and Berri, C. (2019). Differential expression and co-expression gene network analyses reveal molecular mechanisms and candidate biomarkers involved in breast muscle myopathies in chicken. Scientific Reports 9, 14905. https://doi.org/10.1038/s41598-019-51521-1.
34. Le Roy, N., Combes-Soia, L., Brionne, A., Labas, V., Rodriguez-Navarro, A.B., Hincke, M.T., Nys, Y., and Gautron, J. (2019). Guinea fowl eggshell quantitative proteomics yield new findings related to its unique structural characteristics and superior mechanical properties. Journal of Proteomics 209, 103511. https://doi.org/10.1016/j.jprot.2019.103511.
35. Charrier, N.P., Hermouet, A., Hervet, C., Agoulon, A., Barker, S.C., Heylen, D., Toty, C., McCoy, K.D., Plantard, O., and Rispe, C. (2019). A transcriptome-based phylogenetic study of hard ticks (Ixodidae). Scientific Reports 9, 12923. https://doi.org/10.1038/s41598-019-49641-9.
36. Mesbah-Uddin, M., Guldbrandtsen, B., Lund, M.S., Boichard, D., and Sahana, G. (2019). Joint imputation of whole-genome sequence variants and large chromosomal deletions in cattle. Journal of Dairy Science 102, 11193–11206. https://doi.org/10.3168/jds.2019-16946.
37. Faucher, M., Nouvel, L.-X., Dordet-Frisoni, E., Sagné, E., Baranowski, E., Hygonenq, M.-C., Marenda, M.-S., Tardy, F., and Citti, C. (2019). Mycoplasmas under experimental antimicrobial selection: The unpredicted contribution of horizontal chromosomal transfer. PLOS Genetics 15, e1007910. https://doi.org/10.1371/journal.pgen.1007910.
38. Yu, X., Martin, P.G.P., and Michaels, S.D. (2019). BORDER proteins protect expression of neighboring genes by promoting 3′ Pol II pausing in plants. Nature Communications 10, 4359. https://doi.org/10.1038/s41467-019-12328-w.
39. Milon, N., Chantry-Darmon, C., Satge, C., Fustier, M.-A., Cauet, S., Moreau, S., Callot, C., Bellec, A., Gabrieli, T., Saïas, L., Boutonnet, A., Ginot, F., Bergès, H., and Bancaud, A. (2019). ΜLAS technology for DNA isolation coupled to Cas9-assisted targeting for sequencing and assembly of a 30 kb region in plant genome. Nucleic Acids Research 47, 8050–8060. https://doi.org/10.1093/nar/gkz632.
40. Boutigny, A.-L., Gautier, A., Basler, R., Dauthieux, F., Leite, S., Valade, R., Aguayo, J., Ioos, R., and Laval, V. (2019). Metabarcoding targeting the EF1 alpha region to assess Fusarium diversity on cereals. PLOS ONE 14, e0207988. https://doi.org/10.1371/journal.pone.0207988.
41. Zinger, L., Taberlet, P., Schimann, H., Bonin, A., Boyer, F., De Barba, M., Gaucher, P., Gielly, L., Giguet‐Covex, C., Iribar, A., Réjou‐Méchain, M., Rayé, G., Rioux, D., Schilling, V., Tymen, B., Viers, J., Zouiten, C., Thuiller, W., Coissac, E., and Chave, J. (2019). Body size determines soil community assembly in a tropical forest. Molecular Ecology 28, 528–543. https://doi.org/10.1111/mec.14919.
42. Burz, S.D., Abraham, A.-L., Fonseca, F., David, O., Chapron, A., Béguet-Crespel, F., Cénard, S., Le Roux, K., Patrascu, O., Levenez, F., Schwintner, C., Blottière, H.M., Béra-Maillet, C., Lepage, P., Doré, J., and Juste, C. (2019). A Guide for Ex Vivo Handling and Storage of Stool Samples Intended for Fecal Microbiota Transplantation. Scientific Reports 9, 8897. https://doi.org/10.1038/s41598-019-45173-4.
43. Read, T., Fortun-Lamothe, L., Pascal, G., Le Boulch, M., Cauquil, L., Gabinaud, B., Bannelier, C., Balmisse, E., Destombes, N., Bouchez, O., Gidenne, T., and Combes, S. (2019). Diversity and Co-occurrence Pattern Analysis of Cecal Microbiota Establishment at the Onset of Solid Feeding in Young Rabbits. Frontiers in Microbiology 10, 973. https://doi.org/10.3389/fmicb.2019.00973.
44. Debray, K., Marie-Magdelaine, J., Ruttink, T., Clotault, J., Foucher, F., and Malécot, V. (2019). Identification and assessment of variable single-copy orthologous (SCO) nuclear loci for low-level phylogenomics: A case study in the genus Rosa (Rosaceae). BMC Evolutionary Biology 19, 152. https://doi.org/10.1186/s12862-019-1479-z.
45. Martínez De Paz, A., Khajavi, L., Martin, H., Claveria-Gimeno, R., Tom Dieck, S., Cheema, M.S., Sanchez-Mut, J.V., Moksa, M.M., Carles, A., Brodie, N.I., Sheikh, T.I., Freeman, M.E., Petrotchenko, E.V., Borchers, C.H., Schuman, E.M., Zytnicki, M., Velazquez-Campoy, A., Abian, O., Hirst, M., Esteller, M., Vincent, J.B., Malnou, C.E., and Ausió, J. (2019). MeCP2-E1 isoform is a dynamically expressed, weakly DNA-bound protein with different protein and DNA interactions compared to MeCP2-E2. Epigenetics & Chromatin 12, 63. https://doi.org/10.1186/s13072-019-0298-1.
46. Gervais, L., Perrier, C., Bernard, M., Merlet, J., Pemberton, J.M., Pujol, B., and Quéméré, E. (2019). RAD‐sequencing for estimating genomic relatedness matrix‐based heritability in the wild: A case study in roe deer. Molecular Ecology Resources 19, 1205–1217. https://doi.org/10.1111/1755-0998.13031.
47. Macedo, F.L., Reverter, A., and Legarra, A. (2020). Behavior of the Linear Regression method to estimate bias and accuracies with correct and incorrect genetic evaluation models. Journal of Dairy Science 103, 529–544. https://doi.org/10.3168/jds.2019-16603.
48. Navelsaker, S., Magadan, S., Jouneau, L., Quillet, E., Olesen, N.J., Munang’andu, H.M., Boudinot, P., and Evensen, Ø. (2019). Sequential Immunization With Heterologous Viruses Does Not Result in Attrition of the B Cell Memory in Rainbow Trout. Frontiers in Immunology 10, 2687. https://doi.org/10.3389/fimmu.2019.02687.
49. Meola, M., Rifa, E., Shani, N., Delbès, C., Berthoud, H., and Chassard, C. (2019). DAIRYdb: A manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products. BMC Genomics 20, 560. https://doi.org/10.1186/s12864-019-5914-8.
50. Nay, K., Jollet, M., Goustard, B., Baati, N., Vernus, B., Pontones, M., Lefeuvre-Orfila, L., Bendavid, C., Rué, O., Mariadassou, M., Bonnieu, A., Ollendorff, V., Lepage, P., Derbré, F., and Koechlin-Ramonatxo, C. (2019). Gut bacteria are critical for optimal muscle function: A potential link with glucose homeostasis. American Journal of Physiology-Endocrinology and Metabolism 317, E158–E171. https://doi.org/10.1152/ajpendo.00521.2018.
51. Milet, J., Boland, A., Luisi, P., Sabbagh, A., Sadissou, I., Sonon, P., Domingo, N., Palstra, F., Gineau, L., Courtin, D., Massougbodji, A., Garcia, A., Deleuze, J.-F., and Perdry, H. (2019). First genome-wide association study of non-severe malaria in two birth cohorts in Benin. Human Genetics 138, 1341–1357. https://doi.org/10.1007/s00439-019-02079-5.
52. Manzano-Marı́n, A., Coeur D’Acier, A., Clamens, A.-L., Orvain, C., Cruaud, C., Barbe, V., and Jousselin, E. (2020). Serial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids’ di-symbiotic systems. The ISME Journal 14, 259–273. https://doi.org/10.1038/s41396-019-0533-6.
53. Mesbah-Uddin, M., Hoze, C., Michot, P., Barbat, A., Lefebvre, R., Boussaha, M., Sahana, G., Fritz, S., Boichard, D., and Capitan, A. (2019). A missense mutation (p.Tyr452Cys) in the CAD gene compromises reproductive success in French Normande cattle. Journal of Dairy Science 102, 6340–6356. https://doi.org/10.3168/jds.2018-16100.
54. Gresse, R., Chaucheyras Durand, F., Dunière, L., Blanquet-Diot, S., and Forano, E. (2019). Microbiota Composition and Functional Profiling Throughout the Gastrointestinal Tract of Commercial Weaning Piglets. Microorganisms 7, 343. https://doi.org/10.3390/microorganisms7090343.
55. Paris, C., Servin, B., and Boitard, S. (2019). Inference of Selection from Genetic Time Series Using Various Parametric Approximations to the Wright-Fisher Model. G3 GenesGenomesGenetics 9, 4073–4086. https://doi.org/10.1534/g3.119.400778.
56. Krasovec, M., Sanchez-Brosseau, S., and Piganeau, G. (2019). First Estimation of the Spontaneous Mutation Rate in Diatoms. Genome Biology and Evolution 11, 1829–1837. https://doi.org/10.1093/gbe/evz130.
57. Sommeria‐Klein, G., Zinger, L., Coissac, E., Iribar, A., Schimann, H., Taberlet, P., and Chave, J. (2020). Latent Dirichlet Allocation reveals spatial and taxonomic structure in a DNA‐based census of soil biodiversity from a tropical forest. Molecular Ecology Resources 20, 371–386. https://doi.org/10.1111/1755-0998.13109.
58. Jay, F., Boitard, S., and Austerlitz, F. (2019). An ABC Method for Whole-Genome Sequence Data: Inferring Paleolithic and Neolithic Human Expansions. Molecular Biology and Evolution 36, 1565–1579. https://doi.org/10.1093/molbev/msz038.
59. Willemsen, A., Félez-Sánchez, M., and Bravo, I.G. (2019). Genome Plasticity in Papillomaviruses and De Novo Emergence of E5 Oncogenes. Genome Biology and Evolution 11, 1602–1617. https://doi.org/10.1093/gbe/evz095.
60. Wheat and Barley Legacy for Breeding Improvement (WHEALBI) consortium, Pont, C., Leroy, T., Seidel, M., Tondelli, A., Duchemin, W., Armisen, D., Lang, D., Bustos-Korts, D., Goué, N., Balfourier, F., Molnár-Láng, M., Lage, J., Kilian, B., Özkan, H., Waite, D., Dyer, S., Letellier, T., Alaux, M., Russell, J., Keller, B., Van Eeuwijk, F., Spannagl, M., Mayer, K.F.X., Waugh, R., Stein, N., Cattivelli, L., Haberer, G., Charmet, G., and Salse, J. (2019). Tracing the ancestry of modern bread wheats. Nature Genetics 51, 905–911. https://doi.org/10.1038/s41588-019-0393-z.
61. Brucato, N., Fernandes, V., Kusuma, P., Černý, V., Mulligan, C.J., Soares, P., Rito, T., Besse, C., Boland, A., Deleuze, J.-F., Cox, M.P., Sudoyo, H., Stoneking, M., Pereira, L., and Ricaut, F.-X. (2019). Evidence of Austronesian Genetic Lineages in East Africa and South Arabia: Complex Dispersal from Madagascar and Southeast Asia. Genome Biology and Evolution 11, 748–758. https://doi.org/10.1093/gbe/evz028.
62. Bellec, L., Bonavita, M.-A.C., Hourdez, S., Jebbar, M., Tasiemski, A., Durand, L., Gayet, N., and Zeppilli, D. (2019). Chemosynthetic ectosymbionts associated with a shallow-water marine nematode. Scientific Reports 9, 7019. https://doi.org/10.1038/s41598-019-43517-8.
63. Zhang, X., Grosfeld, A., Williams, E., Vasiliauskas, D., Barretto, S., Smith, L., Mariadassou, M., Philippe, C., Devime, F., Melchior, C., Gourcerol, G., Dourmap, N., Lapaque, N., Larraufie, P., Blottière, H.M., Herberden, C., Gerard, P., Rehfeld, J.F., Ferraris, R.P., Fritton, J.C., Ellero-Simatos, S., and Douard, V. (2019). Fructose malabsorption induces cholecystokinin expression in the ileum and cecum by changing microbiota composition and metabolism. The FASEB Journal 33, 7126–7142. https://doi.org/10.1096/fj.201801526RR.
64. Martin, O.C.B., Olier, M., Ellero-Simatos, S., Naud, N., Dupuy, J., Huc, L., Taché, S., Graillot, V., Levêque, M., Bézirard, V., Héliès-Toussaint, C., Estrada, F.B.Y., Tondereau, V., Lippi, Y., Naylies, C., Peyriga, L., Canlet, C., Davila, A.M., Blachier, F., Ferrier, L., Boutet-Robinet, E., Guéraud, F., Théodorou, V., and Pierre, F.H.F. (2019). Haem iron reshapes colonic luminal environment: Impact on mucosal homeostasis and microbiome through aldehyde formation. Microbiome 7, 72. https://doi.org/10.1186/s40168-019-0685-7.
65. Grimm, P., Combes, S., Pascal, G., Cauquil, L., and Julliand, V. (2020). Dietary composition and yeast/microalgae combination supplementation modulate the microbial ecosystem in the caecum, colon and faeces of horses. British Journal of Nutrition 123, 372–382. https://doi.org/10.1017/S0007114519002824.
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