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Publications

This list includes publications for which the GenoToul Bioinformatics facility has been used (hardware infrastructure, Funding, or Staff members). All Sigenae's publications have used the GenoToul Bioinformatics hardware infrastructure.

2008

1. Gaulin, E., Madoui, M.-A., Bottin, A., Jacquet, C., Mathé, C., Couloux, A., Wincker, P., and Dumas, B. (2008). Transcriptome of Aphanomyces euteiches: New Oomycete Putative Pathogenicity Factors and Metabolic Pathways. PLOS ONE 3, e1723. https://doi.org/10.1371/journal.pone.0001723.

2. Noirot, C., Gaspin, C., Schiex, T., and Gouzy, J. (2008). LeARN: A platform for detecting, clustering and annotating non-coding RNAs. BMC Bioinformatics 9, 21. https://doi.org/10.1186/1471-2105-9-21.

3. Courcelle, E., Beausse, Y., Letort, S., Stahl, O., Fremez, R., Ngom-Bru, C., Gouzy, J., and Faraut, T. (2008). Narcisse: A mirror view of conserved syntenies. Nucleic Acids Research 36, D485–D490. https://doi.org/10.1093/nar/gkm805.

4. Ruffel, S., Freixes, S., Balzergue, S., Tillard, P., Jeudy, C., Martin-Magniette, M.L., Merwe, M.J. van der, Kakar, K., Gouzy, J., Fernie, A.R., Udvardi, M., Salon, C., Gojon, A., and Lepetit, M. (2008). Systemic Signaling of the Plant Nitrogen Status Triggers Specific Transcriptome Responses Depending on the Nitrogen Source in Medicago truncatula. Plant Physiology 146, 2020–2035. https://doi.org/10.1104/pp.107.115667.

5. Saillard, C., Carle, P., Duret-Nurbel, S., Henri, R., Killiny, N., Carrère, S., Gouzy, J., Bové, J.-M., Renaudin, J., and Foissac, X. (2008). The abundant extrachromosomal DNA content of the Spiroplasma citri GII3-3X genome. BMC Genomics 9, 195. https://doi.org/10.1186/1471-2164-9-195.

6. Filangi, O., Beausse, Y., Assi, A., Legrand, L., Larré, J.-M., Martin, V., Collin, O., Caron, C., Leroy, H., and Allouche, D. (2008). BioMAJ: A flexible framework for databanks synchronization and processing. Bioinformatics 24, 1823–1825. https://doi.org/10.1093/bioinformatics/btn325.

7. Grosjean, H., Gaspin, C., Marck, C., Decatur, W.A., and Crécy-Lagard, V. de (2008). RNomics and Modomics in the halophilic archaea Haloferax volcanii: Identification of RNA modification genes. BMC Genomics 9, 470. https://doi.org/10.1186/1471-2164-9-470.